Somehow I got it starting/running smoothly atm. Extended the harness for the temp sensor and installed it directly in the lower intake. I can see it registering in the PMS controller now. Both factory O2 sensors installed, but I have yet to see any readings on the PMS screen. Not sure if the MAP sensor is functioning. I don't know how to tell if the IAC is fuctioning or not. 12 degrees locked in with the spout connector out, then plugged back in.
I'll have to order a fitting for the fuel rail before re-plumbing the system. Idles around 1350rpm and does not stall when shifted into gear. I will need to get a weld-on bung fitting so I can re-install the wideband O2.
While waiting for fittings I need to figure out why the new alternator has no output.